Isolation and Characterization of Yeast from the Digestive Tract of Chicken as a Probiotic Candidate

Saroci Dorratul Zahira, Ivan Permana Putra, Anja Meryandini

Abstract


The use of yeast in poultry farming in Indonesia remains underexplored, with applications limited primarily to the genus Saccharomyces. Yeast, recognized as part of the gut microbiota, holds considerable promise as a probiotic. This study evaluated the probiotic properties of yeast isolated from the gastrointestinal tract of native chickens and assessed their potential health-promoting effects for both egg-laying and meat breeds. Six isolates were tested for pathogenicity, bile salt and acid tolerance, autoaggregation, and coaggregation. Antibacterial activity against Salmonella enterica serovar Typhimurium ATCC14028 and molecular identification were also performed. Results showed that six isolates were resilient to gastrointestinal stress and exhibited strong aggregation ability. But, only UBB1 demonstrated notable antibacterial activity, with an inhibition index of 2.09 against S. Typhimurium ATCC14028. The combination of acid and bile tolerance, robust aggregation, and antibacterial activity in UBB1 underscores its potential as a poultry probiotic to enhance gut health and disease resistance. Molecular characterization using ITS sequencing identified UBB1 as Pichia kudriavzevii, a non-pathogenic yeast widely associated with fermented foods. These findings support the development of yeast-based probiotic feed additives as a promising strategy to reduce antibiotic reliance and promote sustainable poultry production, such an approach could ultimately improve poultry health.


Keywords


Pichia kudriavzevii; antibacterial; chicken

Full Text:

PDF

References


Abid, R., Waseem, H., Ali, J., Ghazanfar, S., Ali, G.M., Elasbali, A.M., Alharethi SH. 2022. Probiotic yeast Saccharomyces: back to nature to improve human health. J Fungi. 8(5). doi:10.3390/jof8050444.

Almwafy, A., 2020. Preliminary characterization and identification of gram positive hemolysis bacteria. Al-Azhar J Pharm Sci. 62(2):96–109. doi:10.21608/ajps.2020.118378.

Alkabani, N.S., Tareq, M.O., Anas, A.A.N., Amin, N.O., Shao, Q. L., Nagendra, P.S., Vasso, A., Mutamed, M.A., 2022. Assessment of yeast as potential probiotics: A review of gastrointestinal tract condition and investigation method. J Fungi. 8(4): 365. doi: 10.3390/jof8040365

Ariyanti, T., Sukatma., Suhaemi., Mulyati, S., Rachmawati, F., Noor, S.M., 2023. Determination of antimicrobial resistance profile of Salmonella enteritidis isolated from chicken and human in Indonesia. IOP Conf Ser Earth Environ Sci. 1253(1). doi:10.1088/1755-1315/1253/1/012089.

Bidura IGNG. 2019. Suplementasi probiotik Saccaromyces spp. Kb-13 dalam ransum terhadap produksi karakteristik kualitas telur, dan kolesterol kuning telur ayam lohmann brown. Makalah Ilmiah Peternakan. 22(3) :140-148. DOI: 10.24843/MIP.2019.v22.i03.p08

Borody TJ. 2016. Probiotic recolonisation therapy. United State Patent Application.

Cai, J., Lujuan, X., Wangang, Z., Lijuan, F., Jian, Z., 2022. Selection of potential probiotic yeast from dry cured xuanwei ham and identification of yeast-derived antioxidant peptides. Antioxidants. 11 : 1970. https://doi.org/10.3390/antiox11101970

Chu, Y., Li, M., Jin, J., Dong, X., Xu, K., Jin, L., Qiao, Y., 2023. Advances in the application of the non-conventional yeast Pichia kudriavzevii in food and biotechnology industries. Journal of Fungi. 9(2):170. https://doi.org/10.3390/jof9020170

Dessalegn, M., Andualem, B., 2023. In vitro evaluation of probiotic properties of yeasts and lactic acid bacteria isolated from ersho samples collected from different parts of Ethiopia. Int J Food Prop. 26(2):3048–3064. doi:10.1080/10942912.2023.2270177.

Fadda, M.E., Mossa, V., Deplano, M., Pisano, M.B., Cosentino, S., 2017. In vitro screening of Kluyveromyces strains isolated from Fiore Sardo cheese for potential use as probiotics. Food Sci Technol. 75:100–106. doi:10.1016/j.lwt.2016.08.020.

Gut, A.M., Vasiljevic, T., Yeager, T., Donkor, O.N., 2019. Characterization of yeasts isolated from traditional kefir grains for potential probiotic properties. J Funct Foods. 58:56–66. doi:10.1016/j.jff.2019.04.046.

Hsu, S.A., Jui, Y.C., 2021. Yeast in fermented food and kefir: in vitro characterization of probiotic traits. Journal of Animal and Plant Science. 31(2): 2021. https://doi.org/10.36899/JAPS.2021.2.0245

Hu, X.Q., Liu, Q., Hu, P., Zhou, J.J., Zhang, X., Peng, S.Y., Peng, L.J., Wang, X.D., 2018. Identification and characterization of probiotic yeast isolated from digestive tract of ducks. Poultry Science 9(8): 2902-2908. https://doi.org/10.3382/ps/pey152

Huynh, P., Ng?c., Th?nh, N., Bui, L., Xuan., Phong, H., Quyen, M., Ngoc, T.N., Hoang, D. L. B., Thi P.D.N., Thi, P.N., 2017. Selection of high acid-producing lactic acid bacteria and potential application in pineapple juice fermentation. Bioprocess Eng. 1(2):58–64. doi:10.11648/j.be.20170102.15.

Kanak, E.K., Öztürk, Y.S., 2025. Determination of the probiotic and functional properties of yeasts isolated from different dairy products. Fermentation. 11(2):1–18. doi:10.3390/fermentation11020104.

Ladha, G., Jeevaratnam, K., 2018. Probiotic potential of Pediococcus pentosaceus ljr1, a bacteriocinogenic strain isolated from rumen liquor of goat (Capra aegagrus hircus). Food Biotechnol. 32(1):60–77. doi:10.1080/08905436.2017.1414700.

Lata, P., Kumari, R., Sharma, K.B., Rangra, S., Savitri., 2022. In vitro evaluation of probiotic potential and enzymatic profiling of Pichia kudriavzevii Y33 isolated from traditional home-made mango pickle. J Genet Eng Biotechnol. 20(1):132. doi:10.1186/s43141-022-00416-2.

Nostro, A., Germano, M. P., D’angelo, V., Marino, A., & Cannatelli, M. A., (2000). Activity of plant extracts and plant-derived compounds against Aeromonas hydrophila. Letters in Applied Microbiology, 31(2), 174–177. https://doi.org/10.1046/j.1472-765x.2000.00792.x

Pane, K., Valeria, C., Angela, A., Marcelo, D.T.T., Adriana, V., Eliana, D.G, Maria, R.C., Anrimo, D.M., Andrea, B., Giovanni, G., 2018. Identification of novel crytic multifunctional antimicrobial peptides from the human stomach enable by a computational experimental platform. Syntetyc Biology. 7 (9): 2105-2115. https://doi.org/10.1021/acssynbio.8b00084

Panjaitan, R., Nuraida, L., Dewanti, H,R., 2018. Seleksi isolat bakteri asam laktat asal tempe dan tape sebagai kandidat probiotik. J Teknol dan Ind Pangan. 29(2):175–184. doi:10.6066/jtip.2018.29.2.175.

Republic of Indonesia, Ministry of Agriculture. (2017). Available at : https://simrek.ditjenpkh.pertanian.go.id/fileinfo/Regulasi-3-Permentan142017.pdf?utm_[Date accesed : 12 July 2025]

Republic of Indonesia. (2009). Available at : https://peraturan.bpk.go.id/Details/38801?utm_[Date accesed : 12 July 2025]

Samagaci, L., Ouattara, H.G., Goualie, B.G., Niamke, S.L., 2014. Growth capacity of yeasts potential starter strains under cocoa fermentation stress conditions in Ivory Coast. Emirates J Food Agric. 26(10) : 861-870. doi:10.9755/ejfa.v26i10.18114.

Shao, J.W., Tian, G., Seng, Z.C., Gang, W., Qin, Y., Chun, H.H., Li, C.X., Zhi, C., 2021. Role of bile acids in liver diseases mediated by the gut microbiome. World J Gastroenterol. 27: 3010–3021.

Sibinelli, S.S., Araújo, S.A.L., Hespanhol, J.T., Bayer, S.E., 2022. Revisiting the steps of Salmonella gut infection with a focus on antagonistic interbacterial interactions. FEBS J. 289(14):4192–4211. doi:10.1111/febs.16211.

Statistics Indonesia. (2023). Available at : https://www.bps.go.id/id/statistics-table/3/ZFdobU5GbDZXWFl5UjA5M1IyTmpUR00zTkc5aWR6MDkjMw%3D%3D/produksi-daging-unggas-menurut-provinsi-dan-jenis-unggas--kg---2023.html?year=2023&utm. [Date accesed : 12 July 2025]

Tamura, K., Stecher, G., Peterson, D., Filipski, A., & Kumar, S. (2013). MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution, 30(12), 2725–2729. https://doi.org/10.1093/molbev/mst197

Torshizi, M.A.K., Rahimi, S., Mojgani, N., Esmaeilkhanian, S., Grimes, J.L., 2008. Screening of indigenous strains of lactic acid bacteria for development of a probiotic for poultry. Asian-Australasian J Anim Sci. 21(10):1495–1500. doi:10.5713/ajas.2008.80081.

Wang, B., Rutherfurd, M.K., Liu, N., Zhang, X.X., Mutukumira, A.N., 2024. Evaluation of the probiotic potential of yeast isolated from kombucha in New Zealand. Curr Res Food Sci. 8 March 2024. doi:10.1016/j.crfs.2024.100711.

Wessels, K., Rip, D., Gouws, P., 2021. Salmonella in chicken meat: Consumption, outbreaks, characteristics, current control methods and the potential of bacteriophage use. Foods. 10(8). doi:10.3390/foods10081742.

White, T.J., Bruns, T., Lee, S., Taylor, J., 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White T, editor. PCR Protocols: A Guide to Methods and Applications. New York (US): Academic Press. hlm. 315–322.

Wulan, R., Astuti, R.I., Rukayadi, Y., Meryandini, A., 2021. Evaluation of indigenous Pichia kudriavzevii from cocoa fermentation for a probiotic candidate. Biodiversitas. 22(3):1317–1325. doi:10.13057/biodiv/d220331.

Xueqinn, L.V., Ke, J., Yu, Y. Lingang, S., Xiang, X., Jianghua, L., Guocheng, D., Jian, C., Long, L., 2023. Analysis of acid tolerance mechanism based on membrane microdomains in Saccharomyces cerevisiae. Microbial Cell Vactory. 22: 180. doi : 10.1186/s12934-023-02195-y

Younis, G., Awad, A., Dawod, R.E., Yousef, N.E., 2017. Antimicrobial activity of yeasts against some pathogenic bacteria. Vet World. 10(8):979–983. doi:10.14202/vetworld.2017.979-983.




DOI: https://doi.org/10.14421/biomedich.2026.152.%25p

Refbacks

  • There are currently no refbacks.




Copyright (c) 2026 Saroci Dorratul Zahira, Ivan Permana Putra, Anja Meryandini



Biology, Medicine, & Natural Product Chemistry
ISSN 2089-6514 (paper) - ISSN 2540-9328 (online)
Published by Sunan Kalijaga State Islamic University & Society for Indonesian Biodiversity.

CC BY NC
This work is licensed under a CC BY-NC